Institute of Integrative Omics and Applied Biotechnology

IIOAB


 

 

RESEARCH AREAS 

 

Bioinformatics

Proteomics and Cell Signaling

Cardio-Vascular and Infectious Diseases

Nano-Biotechnology & Systems Biology

Cancer Pharmacogenomics and Personalized Medicine

Plant Genomics and Sustainable Agriculture

Neutrigenomics and Toxicogenomics

Ecology & Environment

Intellectual Property

Renewable Energy 

 

 

BIOINFORMATICS TOOLS AND DATABASES

 

 

  1. miRsig: to identify pan-cancer miRNA-miRNA interaction signatures [PubMed: 28045122]
  2. miRegulome: a knowledge-base of miRNA regulomics and analysis. [PubMed: 26243198]
  3. XomAnnotate: for analysis of heterogeneous and complex clinical exome [PubMed: 25905921]
  4. SIMBA: for bacterial genome assembly. [PubMed: 28105921]
  5. MapRepeat: for assembly of repetitive regions in genomes [PubMed: 26229287]
  6. DISMIRA: prioritizing disease-miRNA associations [PubMed: 26040329]
  7. FunSys : for functional analysis of transcriptome and proteome [PubMed: 22829724
  8. Pannotator : an automated tool for annotation of pan-genomes [PubMed: 24065654
  9. Simplifier : a web tool to eliminate redundant NGS contigs [PubMed: 23275695]
  10. G4ALL: for finishing and drafting bacterial genomes [PubMed: 23888102] 

 

 

Selected International Publications (Aug, 2008 - June, 2017)

 

Cancer  

 Journal Publications

 

  1. Nalluri JJ, Barh D, Azevedo V, Ghosh P. [2017]. miRsig: a consensus-based network inference methodology to identify pan-cancer miRNA-miRNA interaction signatures. Nature, Scientific Reports. 7:39684. doi: 10.1038/srep39684. [PubMed: 28045122] [IF: 5.2]
  2. Barh D, Jain N, Tiwari S, Field JK, Padin-Iruegas E, Ruibal A, López R, Herranz M, Bhattacharya A, Juneja L, Viero C, Silva A, Miyoshi A, Kumar A, Blum K, Azevedo V, Ghosh P, Liloglou T. [2013]. A novel in silico reverse-transcriptomics-based identification and blood-based validation of a panel of sub-type specific biomarkers in lung cancer. BMC Genomics, 14 (Suppl 6), S5 [PubMed: 24564251] [IF: 4.07] 
  3. Barh D, Malhotra R, Ravi B, Sindhurani P. [2010]. microRNA Let-7: an emerging next-generation cancer therapeuticCurrent Oncology; 17 (1), 70-80. [PubMed: 20179807] [IF: 2.47] 
  4. Barh D, Viswanathan G. [2008]. Syzigium Cumini Inhibits Growth and Induces Apoptosis in Cervical Cancer Cell Lines: A Primary Study. ecancermedicalscience, 2: 83 DOI: 10.3332/eCMS.2008.83  [IF: 1.2] 
  5. Barh D. [2009]. Biomarkers, critical disease pathways, drug targets, and alternative medicine in male breast cancer. Curr Drug Targets. 10(1):1-8. [PubMed:19149530] [IF: 3.5] 
  6. Barh D, Kumar A, Chatterjee S, Liloglou T. [2009]. Molecular features, markers, drug targets, and targeted therapeutics in cardiac myxoma. Current Cancer Drug Targets; 9 (6), 705-716.  [PubMed: 19754355] [IF: 4.3]  

 Book chapters

  1. Verma M, Barh D, Hassan SS, Azevedo V. [2015].  Next-generation Molecular Markers: Challenges, Applications, and Future Perspectives. In 'Molecular Biology and Biotechnology", 6th Ed, ISBN: 9781849737951, Edt by Rapley R, Whitehouse D, pp. 420-453, Royal Society of Chemistry, UK
  2. Verma M, Barh D, Tiwari S, Azevedo V. [2015]. Molecular Biomarkers: Overview, Technologies, and Strategies. In 'Molecular Biology and Biotechnology", 6th Ed, ISBN: 9781849737951, Edt by Rapley R, Whitehouse D, pp. 369-419, Royal Society of Chemistry, UK
  3. Bakhtiar SM, Ali A, Barh D. [2015]. Epigenetics in Head and Neck Cancer. [2015]. In “Cancer Epigenetics: Methods Mol Biol” ISBN: 9781493918034, Edt. Verma M, pp.751-769;  Humana Press, Springer USA [PubMed: 25421690]
  4. Oznur M, Dede S, Barh D, Gunduz M. [2015]. Cytogenetic Early Markers in Gynecologic Cancers. In "Noninvasive Molecular Markers in Gynecologic Cancers", ISBN: 9781466569386, Edt. Barh & Gunduz, pp. 43-60. Taylor & Francis, USA
  5. Yilmaz B, Moroski-Erkul CA, Hatipoglu OF, Gunduz E, Barh D, Gunduz M. [2015]. Biomarkers for Early Detection of Familial Breast Cancer. "Noninvasive Molecular Markers in Gynecologic Cancers", ISBN: 9781466569386, Edt. by Barh & Gunduz, pp. 168-181. Taylor & Francis, USA
  6. E Demir, B Atar, D Dhawan, Barh D, M Gunduz, E Gunduz. [2014]. Breast Cancer Stem Cells and Cellomics. In "Omics Approaches in Breast Cancer: Towards Next-Generation Diagnosis, Prognosis and Therapy ", ISBN: 9788132234722, Edt. by Barh D, pp. 245-263, Springer, LLC, Germany. DOI: 10.1007/978-81-322-0843-3_12
  7. ZN Unal, G Kaya, Barh D, E Gunduz, M Gunduz. [2014]. Omics of Male Breast Cancer. In "Omics Approaches in Breast Cancer: Towards Next-Generation Diagnosis, Prognosis and Therapy ", ISBN: 9788132234722, Edt. by Barh D, pp. 245-263, Springer, LLC, Germany. pp. 265-276, Springer, LLC. DOI: 10.1007/978-81-322-0843-3_13
  8. Verma M, Barh D. [2014]. Breast Cancer Biomarkers for Risk Assessment, Screening, Detection, Diagnosis, and Prognosis. In "Omics Approaches in Breast Cancer: Towards Next-Generation Diagnosis, Prognosis and Therapy ", ISBN: 9788132234722, Edt. by Barh D, pp. 245-263, Springer, LLC, Germany. pp. 393-407, Springer, LLC. DOI: 10.1007/978-81-322-0843-3_20
  9. EC Yiannakopoulou, Barh D. [2014]. Pharmacogenomics–Pharmacoepigenomics of Breast Cancer Therapy: Clinical Implications. In "Omics Approaches in Breast Cancer: Towards Next-Generation Diagnosis, Prognosis and Therapy ", ISBN: 9788132234722, Edt. by Barh D, pp. 245-263, Springer, LLC, Germany. pp. 499-518, Springer, LLC. DOI: 10.1007/978-81-322-0843-3_25
  10. M Verma, Barh D, N Jain. [2014]. Noninvasive Early Markers in Lung Cancer. In "Cancer Biomarkers: Minimal and Noninvasive Early Diagnosis and Prognosis", Edt by Barh et al. ISBN: 9781466584280, pp. 415-431. Taylor & Francis LLC, USA, DOI: 10.1201/b16389-23
  11. Barh D, Agte V, Dhawan D, Agte V, and Padh H: [2012]. Cancer Biomarkers for Diagnosis, Prognosis, and Therapy. In “Molecular and Cellular Therapeutics”. ISBN: 9780470748145. Edt by David Whitehouse and Ralph Rapley. pp. 18-68, doi: 10.1002/9781119967309.ch2, John Wiley & Sons Ltd, UK.

  Books

  1. Barh D (Edt): Precision Medicine: Prediction, Prevention with Personalization. ISBN: 978-1498775601, First Ed: 2017; Taylor & Francis LLC, USA. (In Press)
  2. Verma M, Barh D (Edt): Progress and Challenges in Precision Medicine. ISBN: 9780128094112, First Ed: Jan 2017;  Elsevier USA, USA
  3. Barh D, Gunduz M (Edts): Noninvasive Molecular Markers in Gynecologic Cancers.  ISBN: 9781466569386, First Ed:  2015; Taylor & Francis LLC, USA
  4. Barh D (Edt): Omics approaches in breast cancer: towards next-generation diagnosis, prognosis, and therapy. ISBN: 9788132208426; First Ed: 2014; Springer LLC  
  5. Barh D, Dhwan D and Ganguly NK (Edts): Omics for Personalized Medicine. ISBN: 978-8132211839, First Ed: 2013; Springer LLC,  
  6. Barh D, Carpi A, Verma, M, and Gunduz M (Edts): Cancer Biomarkers: Non-Invasive Early Diagnosis and Prognosis. ISBN: 9781466584280; First Ed: 2014; Taylor & Francis LLC, USA 
  7. Barh D, Das K, and Srivastava HC: Male Breast Cancer: Identifying and targeting critical disease signaling pathways towards development of personalized phytotherapy. ISBN: 9783843367592; First Ed: 2010; LAP Lambert Academic Publishing, Germany.
 
 
 Bioinformatics
 Journal Publications
  1. Barh D, Kamapantula B, Jain N, Nalluri J, Bhattacharya A, Juneja L, Barve N, Tiwari S, Miyoshi A, Azevedo V, Blum K, Kumar A, Silva A, Ghosh P [2015]. miRegulome: a knowledge-base of miRNA regulomics and analysis. Nature, Scientific Reports, 5:12832 [PubMed: 26243198] [IF: 5.7]
  2. Talukder AK, Ravishankar S, Sasmal K, Gandham S, Prabhukumar J, Achutharao PH, Barh D, Blasi F. [2015]. XomAnnotate: Analysis of heterogeneous and complex exome- a step towards translational medicine. PLOS ONE; 10(4):e0123569. [PubMed: 25905921] [IF: 4.09]
  3. Nalluri JJ, Kamapantula BK, Barh D, Jain N, Bhattacharya A, de Almeida SS, Ramos RTJ, Silva A, Azevedo V, Ghosh P. [2015]. DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis. BMC Genomics. 16(Suppl 5):S12. [PubMed: 26040329] [IF=4.04]
  4. Folador EL, Hassan SS, Lemke N, Barh D, Silva A, Ferreira RS, Azevedo V. [2014]. An improved interolog mapping-based computational prediction of protein-protein interactions with increased network coverage. Integr Biol (Camb). 6(11):1080-7. [PMID: 25209055] [IF=4.45] 
  5. Ramos RTJ, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A. [2012]. Simplifier: a web tool to eliminate redundant NGS contigs. Bioinformation 8(20): 996-999. [PubMed: 23275695] [IF: 1.15]

  Book chapters

  1. Nalluri JJ, Barh D, Azevedo V, Ghosh P. [2017]. Bioinformatics and systems biology in bio-engineering. In “Omics Technologies and Bio-engineering: Towards Improving Quality of Life”. Edt by Barh D, Azevedo V, ISBN: 9780128046593, Elsevier USA (In press)
  2. Barh D, Yiannakopoulou UC, SALAWU UO, Chowbina S, Chaitankar V, Ghosh P, Azevedo V: [2013]. In Silico Models: From Simple Networks to Complex Diseases. In “Animal Biotechnology: Models in Discovery and Translation”, ISBN: 9780124160026, Edt by Verma and Singh. Pp. 385-405, Elsevier, USA
  3. Chaitankar V, Barh D, Zambare V, Azevedo V, Ghosh P: [2013].  Computational Regulomics: Information Theoretic Approaches Towards Regulatory Network Inference. In “OMICS: Applications in Biomedical, Agricultural, and Environmental Sciences” ISBN 9781466562813. Edt by Barh D, Zambare V, Azevedo V. pp. 225–244, Taylor & Francis LLC, USA 

     

    Genomics

     Journal Publications

    1. Mariano DC, Sousa Tde J, Pereira FL, Aburjaile F, Barh D, Rocha F, Pinto AC, Hassan SS, Saraiva TD, Dorella FA, de Carvalho AF, Leal CA, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002. BMC Genomics. 2016 Apr 30;17:315. doi: 10.1186/s12864-016-2673-7. [PMID: 27129708] [IF=3.8]
    2. Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimarães LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, Azevedo V, Silva A. [2016]. Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom. Genome Announc. 2016 Aug 11;4(4). pii: e00683-16. doi: 10.1128/genomeA.00683-16. [PMID: 27516502]
    3. Almeida S, Tiwari S, Mariano D, Souza F, Jamal SB, Coimbra N, Raittz RT, Dorella FA, Carvalho AF, Pereira FL, Soares Sde C, Leal CA, Barh D, Ghosh P, Figueiredo H, Moura-Costa LF, Portela RW, Meyer R, Silva A, Azevedo V. The genome anatomy of Corynebacterium pseudotuberculosis VD57 a highly virulent strain causing Caseous lymphadenitis. Stand Genomic Sci. 2016 Apr 8;11:29. doi: 10.1186/s40793-016-0149-7. [PMID: 27066196] [IF=1.5]
    4. Ali A, Naz A, Soares SC, Bakhtiar M, Tiwari S, Hassan SS, Hanan F, Ramos R, Pereira U, Barh D, Figueiredo HC, Ussery DW, Miyoshi A, Silva A, Azevedo V. [2015]. Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets. Biomed Res Int.. 2015:139580 [PubMed: 25705648] [IF=2.7]  
    5.  Hassan SS, Guimarães LC, Pereira Ude P, Islam A, Ali A, Bakhtiar SM, Ribeiro D, Rodrigues Dos Santos A, Soares Sde C, Dorella F, Pinto AC, Schneider MP, Barbosa MS, Almeida S, Abreu V, Aburjaile F, Carneiro AR, Cerdeira LT, Fiaux K, Barbosa E, Diniz C, Rocha FS, Ramos RT, Jain N, Tiwari S, Barh D, Miyoshi A, Müller B, Silva A, Azevedo V. [2012] Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology. Stand Genomic Sci. 7(2):189-99. [PubMed: 23408795[IF: 3.6] 
    6. Hassan SS, Schneider MP, Ramos RT, Carneiro AR, Ranieri A, Guimarães LC, Ali A, Bakhtiar SM, Pereira Ude P, Dos Santos AR, Soares Sde C, Dorella F, Pinto AC, Ribeiro D, Barbosa MS, Almeida S, Abreu V, Aburjaile F, Fiaux K, Barbosa E, Diniz C, Rocha FS, Saxena R, Tiwari S, Zambare V, Ghosh P, Pacheco LG, Dowson CG, Kumar A, Barh D, Miyoshi A, Azevedo V, Silva A. [2012]. Whole-Genome Sequence of Corynebacterium pseudotuberculosis Strain Cp162, Isolated from Camel. Journal of Bacteriology; 194(20):5718-19. [PubMed: 23012291[IF: 3.92] emphasis on algae. Appl Microbiol Biotechnol; 96(5):1125-35. [PubMed: 23070650[IF: 3.42]
    7. Carneiro AR, Ramos RT, Barbosa1 HPM, Schneider MPC, Barh D, Azevedo V, Silva A. [2012]. Quality of prokaryote genomes assembly: Indispensable issues of factors affecting prokaryote genome assembly quality. Gene. 505(2):365-7 [PubMed: 22721771] [IF: 2.26]
    8. Cerdeira LT, Carneiro AR, Bol E, Barbosa MS, Coimbra N, Ramos RTJ, Almeida SS, Santos AR, Soares SC, Pinto AC, Ali A, Barbosa E, Dorella FA, Rocha FS, Guimaraes LG, Figueira F, Ghosh P, Zambare V, Barve N, Tiwari S, Barh D, Miyoshi A, Schneider MPC, Azevedo V, Silva A. [2011]. Complete Genome Sequence of Corynebacterium pseudotuberculosis strain - CIP 52.97- isolated from Horse in Kenya. Journal of Bacteriology, 193(24):7025-6. [PubMed: 22123771] [IF: 3.72]
    9. Cerdeira LT, Pinto AC, Cruz Schneider MP, Silva S, Santos AR, Vieira Barbosa EG, Ali A, Barbosa MS, Carneiro AR, Jucá Ramos RT, Santos O, Barh D, Barve N, Zambare V, Estevão S, Guimarães LC, de Castro S, Dorella FA, Rocha FS, Augusto V, Tauch A, Trost E, Miyoshi A, Azevedo V, Silva A. [2011]. Whole genome sequence of Corynebacterium pseudotuberculosis PAT10 of strain isolated from sheep in Patagonia, ArgentineJournal of Bacteriology, 193(22):6420-1. [PubMed: 22038974] [IF: 3.72]

     Book chapters

    1. Gomes de Sá PHC, Guimarães LC, das Graças DA, de Oliveira Veras AA, Barh D, Azevedo V, Silva A, Ramos RTJ. NGS and data-analysis: strategies, tools, pipelines and protocols. In “Omics Technologies and Bio-engineering: Towards Improving Quality of Life”. Edt by Barh D, Azevedo V, ISBN: 9780128046593, Elsevier USA (In press)
    2. de Oliveira Veras AA,  Gomes de Sá PHC,  Pinheiro KC, Barh D, Azevedo V, Ramos RTJ, Silva A. Computational techniques in data integration and big-data handling in omics. In “Omics Technologies and Bio-engineering: Towards Improving Quality of Life”. Edt by Barh D, Azevedo V, ISBN: 9780128046593, Elsevier USA (In press)
    3. Jha UC, Barh D. [2016]. Whole genome resequencing: Current status and future prospect in crop improvement. [2016] In “Applied Molecular Biotechnology: The Next Generation of Genetic Engineering”. Edt by Khan MS, Khan IA, Barh D, ISBN: 9781498714815, pp. 187–211, Taylor & Francis LLC, USA
    4. Silva A, Abreua VD, Barh D, Miyoshi A, Azevedo V: [2013]. Next Generation Sequencing and Assembly of Bacterial Genomes. In “OMICS: Applications in Biomedical, Agricultural, and Environmental Sciences” ISBN 9781466562813. Edt by Barh D, et al. pp.367–383, Taylor & Francis LLC, USA

     

     Genome Sequence Published

     13 complete genomes of Corynebacterium pseudotuberculosisGenBank (Click to access)

      

    Infectious disease and drug discovery

     Journal Publications

    1.  SS Hassan, S Tiwari, LC Guimarães, SB Jamal, Barh D et al. [2014]. Proteome scale comparative modeling for conserved drug and vaccine targets identification in Corynebacterium pseudotuberculosis. BMC Genomics. 15 (Suppl 7), S3. [IF=4.04] 
    2. Tiwari S, da Costa MP, Almeida S, Hassan SS, Jamal SB, Oliveira A, Folador EL, Rocha F, de Abreu VA, Dorella F, Hirata R, de Oliveira DM, da Silva Teixeira MF, Silva A, Barh D, Azevedo V. [2014]. C. pseudotuberculosis Phop confers virulence and may be targeted by natural compounds. Integr Biol (Camb). 6(11):1088-99. [PMID: 25212181[IF=4.45]   
    3. Barh D, Barve N, Gupta K, Chandra S, Jain N, et al. [2013]. Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds. PLoS ONE 8(1): e52773. doi:10.1371/journal.pone.0052773 [IF: 4.09] 
    4. Barh D, Gupta K, Jain N, Khatri G, León-Sicairos N, Canizalez-Roman A, Tiwari S, et al. [2013]. Conserved host–pathogen PPIs: Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by Piper betel compounds. Integrative Biology  [PubMed: 23288366 ] DOI: 10.1039/C2IB20206A [IF: 4.5] 
    5. Santos AR, Carneiro A, Gala-García A, Pinto A, Barh D, Barbosa E, Aburjaile F, Dorella F, Rocha F, Guimarães L, Zurita-Turk M, Ramos R, Almeida S, Soares S, Pereira U, Abreu VC, Silva A, Miyoshi A, Azevedo V. [2012]. The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome. BMC Genomics; S5:S6. [PMID: 23095951] [IF: 4.07]
    6. Barh D, Jain N, Tiwari S, Parida BP, D'Afonseca V, Li L, Ali A, Santos AR, Guimarães LC, de Castro Soares S, Miyoshi A, Bhattacharjee A, Misra AN, Silva A, Kumar A, Azevedo V. [2011]. A novel comparative genomics analysis for common drug and vaccine targets in Corynebacterium pseudotuberculosis and other CMN group of human pathogensChemical Biology & Drug Design; 78(1):73-84.  [PubMed: 21443692] [IF: 2.47] 
    7. Barh D, Misra AN, Kumar A, Vasco A. [2010]. A novel strategy of epitope design in Neisseria gonorrhoeae. Bioinformation; 5 (2), 77-85. [PubMed: 21346868] [IF: 1.15]
    8. Barh D and Kumar A. [2009]. In silico identification of candidate drug and vaccine targets from various pathways in Neisseria gonorrhoeae. In Silico Biol.; Vol. 9, 0019. [PubMed: 20109152] [Cited in Nature Reviews Microbiology, 9(7): 2011

    Book chapters

    1. de Sousa CS, Hassan SS, Pinto AC, Silva WM, de Almeida SS, de Castro SS, Barh D, Azevedo V. [2017] Omics approaches in microbial biotechnology: medical, agricultural, industrial and environmental applications. In “Omics Technologies and Bio-engineering: Towards Improving Quality of Life”. Edt by Barh D, Azevedo V, ISBN: 9780128046593, Elsevier USA (In press)
    2. Barh D, Ahmad S, and Bhattacharjee A: [2012]. In silico and ultra-high throughput screenings (uHTS) in drug discovery: an overview. In “Pharmaceutical Biotechnology (2nd Ed)”. ISBN: 9783527329946. Edt by Oliver Kayser and Herbert Warzecha. pp.451-490, Doi: 10.1002/9783527632909.ch18, Wiley-VCH Verlag GmbH & Co, Germany.

     Books 

    1.  Khan MS, Khan IA, Barh D (Edt): Applied Molecular Biotechnology: The Next Generation of Genetic Engineering. ISBN: 9781498714815, 2016; Taylor & Francis LLC, USA

     

      Neuropsychiatric/ metabolic/ and other disease

    Journal Publications  

    1. Zolnikova IV, Strelnikov VV, Skvortsova NA, Tanas AS, Barh D, Rogatina EV, Egorova IV, Levina DV, Demenkova ON, Prikaziuk EG, Ivanova ME. [2016]. Stargardt disease-associated mutation spectrum of a Russian Federation cohort. Eur J Med Genet. 60(2):140-147. doi: 10.1016/j.ejmg.2016.12.002. [PubMed: 27939946] [IF=1.5]
    2. Hill E, Han D, Dumouchel P, Dehak N, Quatieri T, Moehs C, Oscar-Berman M, Giordano J, Simpatico T, Barh D, Blum K. [2013]. Long term Suboxone™ emotional reactivity as measured by automatic detection in speech. PLoS One. 8(7):e69043. [ PubMed:23874860] [IF: 4.0] 
    3. Blum K, Oscar-Berman M, Demetrovics Z, Barh D, Gold MS. [2014]. Genetic Addiction Risk Score (GARS): Molecular Neurogenetic Evidence for Predisposition to Reward Deficiency Syndrome (RDS). Mol Neurobiol. 50(3):765-96. [PMID: 24878765] [IF=6.0] 
    4. Miller M, Chen A, Stokes A, Silverman S, Bowirrat A, Manka M, Manka D, Miller D, Perrine K, Chen T, Bailey J, Downs BW, Waite R, Madigan M, Braverman E, Damle U, Kerner M, Giordano J, Morse S, Oscar-Berman M, Barh D, Blum K. [2012]. Early Intervention of Intravenous KB220IV- Neuroadaptagen Amino-Acid Therapy (NAAT)™ Improves Behavioral Outcomes in a Residential Addiction Treatment Program: A Pilot StudyJournal of Psychoactive Drugs. DOI:10.1080/02791072.2012.737727 [IF: 1.72]  
    5. Blum K, Giordano J, Oscar-Berman M, Bowirrat A, Simpatico T, Barh D. [2012]. Diagnosis and Healing In Veterans Suspected of Suffering from Post-Traumatic Stress Disorder (PTSD) Using Reward Gene Testing and Reward Circuitry Natural Dopaminergic Activation. J Genet Syndr Gene Ther. 31;3(3):1000116. [PMID: 23264885]
    6. Blum K, Chen ALC, Giordano J, Borsten J, Chen TJH, Hauser M, Simpatico T, Femino J, Braverman ER, Barh D. [2012]. The Addictive Brain: All Roads Lead to Dopamine. Journal of Psychoactive Drugs, 44 (2), 134–143. [PubMed: 22880541] [IF: 1.72]
    7. Chen ALC, Blum K, Chen TJH, Giordano J, Downs BW, Han D, Barh D, Braverman ER. [2012]. Correlation of the Taq1 Dopamine D2 Receptor Gene and Percent Body Fat in Obese and Screened Control Subjects: A Preliminary ReportFood & Function; 3(1):40-8. [PubMed: 22051885] [IF: 1.17]
    8. Morse S, Giordano J, Perrine K, Downs BW, Waite RL, Madigan M, Bailey J, Braverman ER,  Damle U, Knopf J, Simpatico T, Moeller MD, Barh D, Blum K. [2011]. Audio Therapy Significantly Attenuates Aberrant Mood in Residential Patient Addiction Treatment: Putative Activation of Dopaminergic Pathways in the Meso-Limbic Reward Circuitry of Humans. J Addict Res Ther;  S3:001. doi:10.4172/2155-6105.S3- 001
    9. Blum K, Chen TJH, Bailey J, Bowirrat A, Femino J, Chen ALC, Madigan M, Simpatico T, Morse S, Giordano J, Damle U, Kerner M, Braverman ER, Fornari F, Downs BW, Rector C, Barh D, Berman MC. [2011]. Can the chronic administration of the combination of buprenorphine and naloxone block dopaminergic activity causing anti-reward and relapse potential? Molecular Neurobiology; 44(3):250-68. [PubMed: 21948099] [IF: 6.068]
    10. Blum K, Chen ALC, Oscar-Berman M, Chen TJH, Lubar J, White N, Lubar J, Bowirrat A, Braverman E, Schoolfield J, Waite RL, Downs BW, Madigan M, Comings DE, Davis C, Kerner MM, Knopf J, Palomo T, Giordano JJ, Morse SA, Fornari F, Barh D, Femino J, Bailey JA.  [2011]. Generational Association Studies of Dopaminergic Genes in Reward Deficiency Syndrome (RDS) Subjects: Selecting Appropriate Phenotypes for Reward Dependence BehaviorsInt J Env Res Public Health; 8(12):4425-4459. [PubMed: 22408582] [IF: 1.6]

     Book chapters

    1. Blum K, Han D, Giordano J, Lohmann R,  Braverman ER, Madigan MA,  Barh D, Femino J, Hauser M, Downs BW, Simpatico T: [2013]. Neurogenetics and Nutrigenomics of Reward Deficiency Syndrome (RDS): Stratification of Addiction Risk and Mesolimbic Nutrigenomic Manipulation of Hypodopaminergic Function. In “Omics for Personalized Medicine” ISBN: 9788132211839, Edt by Barh D, et al. pp.365-398, Springer, LLC, Germany
    2. López-Corrales NL, Miyoshi A, Azevedo V, Stuztman T, and Barh D: [2011]. Omics Approaches in Toxicology Research and Biomedical Applications. In “OMICS: Biomedical Perspectives and Applications”. ISBN: 9781439850084. Edt by Barh D, et al. pp.53–76, Taylor & Francis LLC, USA.
    3. Barh D, Margaret AM, and Blum K: [2011]. Future Omics Perspective: Paving a Path to Optimization of Health. In “OMICS: Biomedical Perspectives and Applications”. ISBN: 9781439850084. Edt by Barh D, Median M, Blum K. pp.567–576, Taylor & Francis LLC, USA.

     Books

    1. Barh DBlum K, and Madigan MA (Edts): OMICS: Biomedical Perspectives and Applications ISBN: 9781439850084; First Ed: 2011, CRC Press, USA
    2. Srivastava HC, Barh DGenetics: Fundamentals and Applications. ISBN: 8181892631; First Ed: 2008; International Book Distributing Company, INDIA.

     

    Biotechnology, Agri, and Bioprocess

    Journal Publications 

    1. Jha UC, Chaturvedi SK, Bohra A, Basu PS, Khan MS, Barh D. [2014]. Abiotic stresses, constraints, and improvement strategies in chickpea. Plant Breeding, DOI: 10.1111/pbr.12150.  [IF=1.8]
    2. Hemaiswarya S, Raja R, Carvalho IS, Ravikumar R, Zambare V, Barh D. [2012].  An Indian scenario on renewable and sustainable energy sources with emphasis on algae. Appl Microbiol Biotechnol; 96(5):1125-35. [PMID: 23070650] [IF: 3.42] 
    3. Hollmann A, Saviello M, Delfederico L, Saraiva TDL, Barh D, Chandra S, Gupta K, Jain N, Zambare V, Kumar A, Misra AN, Christopher L, Azevedo V, Semorile L, Miyoshi A. [2012]. Tight controlled expression and secretion of Lactobacillus brevis SlpA in Lactococcus lactis. Biotechnology Letters; 34(7):1275-81. [PubMed: 22391736] [IF: 1.76]
    4. Zambare V. Zambare A, Barh D, Christopher LP. [2012]. Optimization of enzymatic hydrolysis of prairie cordgrass for improved ethanol production. J. Renewable Sustainable Energy 4, 033118 [IF: 0.885]
     Book chapters
    1. de Sousa CS, Corrêa Mendonça MA, Hassan SS, Azevedo VA, Barh D. [2016]. Biotechnology for improved crop productivity and quality. In “Applied Molecular Biotechnology: The Next Generation of Genetic Engineering”. Edt by Khan MS, Khan IA, Barh D, ISBN: 9781498714815, pp. 231-248, Taylor & Francis LLC, USA
    2. Jha UC, Bhat JS, Patil BS, Hossain F, Barh D. [2015]. Functional Genomics: Applications in Plant Science. in "PlantOmics: The Omics of Plant Science", ISBN: 9788132221722; Edt by Barh D, Khan MS, Davies E;  pp. 65-111, Springer, LLC
    3. Barh D. Davies E. [2015]. Plantomics and Futuromics. in "PlantOmics: The Omics of Plant Science", ISBN: 9788132221722; Edt by Barh D, Khan MS, Davies E; pp. 821-825, Springer, LLC
    4. Bohra A, Jha UC, Singh B, Soren KR, Singh IP, Chaturvedi SK, Nadarajan N, and Barh D: [2014]. Omics Approaches in Pulses. In “OMICS Applications in Crop Science” ISBN 9781466585256, Edt by Barh D. pp. 101–138, Taylor & Francis LLC, USA 
     Books
    1. Barh D, Azevedo V (Edt): Omics Technologies and Bio-Engineering: Towards Improving Quality of Life. ISBN: 9780128046593, First Ed: 2017; Elsevier USA. (In Press)
    2. Khan MS, Khan IA, Barh D (Edt): Applied Molecular Biotechnology: The Next Generation of Genetic Engineering. ISBN: 9781498714815, 2016; Taylor & Francis LLC, USA
    3. Barh D, Khan MS, Davies E. (Edt): PlantOmics: the omics of plant science. ISBN: 9788132221722; First Ed: 2015; Springer LLC.
    4. Barh D (Edts): OMICS Applications in Crop Science. ISBN: 9781466562813; First Ed: Dec, 2013. Taylor & Francis LLC, USA
    5. Singh K, Vig AP, and Barh DVERMICOMPOSTING: a boon for soil, plant, and environment.  ISBN: 9783844334425; 2011; LAP Lambert Academic Publishing, Germany.

     

      

     ALL PEER-REVIEWED ALL PUBLICATIONS AND PROCEEDINGS  

    (Aug, 2008 - June, 2017)

    2017

    1. Nalluri JJ, Barh D, Azevedo V, Ghosh P. miRsig: a consensus-based network inference methodology to identify pan-cancer miRNA-miRNA interaction signatures. Sci Rep. 2017 Jan 3;7:39684. doi: 10.1038/srep39684. [PMID: 28045122] [IF=5.25]
    2. Jaiswal AK, Tiwari S, Jamal SB, Barh D, Azevedo V, Soares SC. [2017] An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach. Int J Mol Sci. 2017 Feb 14;18(2). pii: E402. doi: 10.3390/ijms18020402.[PMID: 28216574] [IF=3.25]
    3. Almeida S, Sousa C, Abreu V, Diniz C, Dorneles EM, Lage AP, Barh D, Azevedo V. [2017] Exploration of Nitrate Reductase Metabolic Pathway in Corynebacterium pseudotuberculosis. Int J Genomics. 2017;2017:9481756. doi: 10.1155/2017/9481756. [PMID: 28316974] [IF=1.8]
    4. Kumavath RN, Barh D, Azevedo V, Kumar AP. [2017] Potential pharmacological applications of enzymes associated with bacterial metabolism of aromatic compounds. Journal of Microbiology and Antimicrobials, 9(1):1-13. doi: 10.5897/JMA2015.0354 

    2016

    1.  Zolnikova IV, Strelnikov VV, Skvortsova NA, Tanas AS, Barh D, Rogatina EV, Egorova IV, Levina DV, Demenkova ON, Prikaziuk EG, Ivanova ME. [2016]. Stargardt disease-associated mutation spectrum of a Russian Federation cohort. Eur J Med Genet. 60(2):140-147. doi: 10.1016/j.ejmg.2016.12.002. [PMID: 27939946] [IF=1.5]
    2. T McLaughlin, M Febo, RD Badgaiyan, Barh D, K Dushaj, ER Braverman, K Blum. [2016]. KB220Z™ a Pro-Dopamine Regulator Associated with the Protracted, Alleviation of Terrifying Lucid Dreams. Can We Infer Neuroplasticity-induced Changes in the Reward Circuit. J Reward Defic Syndr Addict Sci. 2 (1), 3-13 [PMID: 28210713]
    3. Barh D. [2016]. Integrating fitness genomics in precision medicine. Precision Med. 1 (1): 7-9
    4. Gupta KK, Rahangdale S, Barh D. [2016]. An integrative bioinformatics approach for identification of biomarkers in myocardial infraction. Precision Med in Cardiol. 1(1): 8-12
    5. Barh D. [2016]. Precision markers in lung cancer: an Indian scenario of mutations. Precision Med. In Onclogy. (1): 24-26.
    6. R Kumavath, M Azad, P Devarapalli, S Tiwari, S Kar, D Barh, V Azevedo, Kumar AP. [2016]. Novel aromatase inhibitors selection using induced fit docking and extra precision methods: Potential clinical use in ER-alpha-positive breast cancer. Bioinformation 12 (6), 324-331[PMID: 28293075] [IF=1.5]
    7. Folador EL, de Carvalho PV, Silva WM, Ferreira RS, Silva A, Gromiha M, Ghosh P, Barh D, Azevedo V, Röttger R. [2016]. In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks. BMC Syst Biol. 10(1):103. [PMID:   27814699] [IF=3.15]
    8. Muhammad SA, Ali A, Naz A, Hassan A, Riaz  N, Saeed-ul-Hassan S, Andleeb S, Barh D. [2016] A New Broad-Spectrum Peptide Antibiotic Produced by Bacillus brevis Strain MH9 Isolated from Margalla Hills of Islamabad, Pakistan. Int J Pept Res Ther. 22: 271. doi:10.1007/s10989-015-9508-2 [IF: 1.9]
    9. Oliveira A, Teixeira P, Azevedo M, Jamal SB, Tiwari S, Almeida S, Silva A, Barh D, Dorneles EM, Haas DJ, Heinemann MB, Ghosh P, Lage AP, Figueiredo H, Ferreira RS, Azevedo V. [2016]. Corynebacterium pseudotuberculosis may be under anagenesis and biovar Equi forms biovar Ovis: a phylogenic inference from sequence and structural analysis. BMC Microbiol. 2016 Jun 2;16:100. doi: 10.1186/s12866-016-0717-4. [PMID:27251711] [IF=2.5]
    10. Saravia TDL, Etelvino GM, Oliveira M, Sousa CS, Azevedo MSP, Leblanc AM, Leblanc JG, Barh D, Ghosh P, Venanzi F, Figueiredo HCP, Santos RAS, Azevedo V. [2016] Lactococcus lactis NCDO2118 produces anti-hypertensive GABA and exerts acute hypotensive in spontaneously hypertensive rats. Archives of Medical Research, doi: 10.18103/mra.v4i7.620
    11. Mariano DC, Sousa Tde J, Pereira FL, Aburjaile F, Barh D, Rocha F, Pinto AC, Hassan SS, Saraiva TD, Dorella FA, de Carvalho AF, Leal CA, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002. BMC Genomics. 2016 Apr 30;17:315. doi: 10.1186/s12864-016-2673-7. [PMID: 27129708] [IF=3.8]
    12. Mariano DC, Pereira FL, Aguiar EL, Oliveira LC, Benevides L, Guimarães LC, Folador EL, Sousa TJ, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. [2016]. SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology. BMC Bioinformatics. 17(Suppl 18):456. doi: 10.1186/s12859-016-1344-7. [PMID: 28105921] [IF=2.5]
    13. Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimarães LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, Azevedo V, Silva A. [2016]. Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom. Genome Announc. 2016 Aug 11;4(4). pii: e00683-16. doi: 10.1128/genomeA.00683-16. [PMID: 27516502]
    14. Almeida S, Tiwari S, Mariano D, Souza F, Jamal SB, Coimbra N, Raittz RT, Dorella FA, Carvalho AF, Pereira FL, Soares Sde C, Leal CA, Barh D, Ghosh P, Figueiredo H, Moura-Costa LF, Portela RW, Meyer R, Silva A, Azevedo V. The genome anatomy of Corynebacterium pseudotuberculosis VD57 a highly virulent strain causing Caseous lymphadenitis. Stand Genomic Sci. 2016 Apr 8;11:29. doi: 10.1186/s40793-016-0149-7. [PMID: 27066196] [IF=1.5]
    15. Barh D, Ivanova ME, Azevedo V. [2016]. Are We Ready for Real-Time Applications of Clinical NGS? Next Generat Sequenc & Applic. 2:122.doi:10.4172/2469-9853.1000122
    16. Sousa CS, Barros BA, Barh D, Ghosh P, Azevedo V, Barros EG, Moreira MA. [2016]. In silico characterization of 1,2-diacylglycerol cholinephosphotransferase and lysophospha-tidylcholine acyltransferase genes in Glycine max L. Merrill. Genet Mol Res. 15(3). doi: 10.4238/gmr.15038974. [PMID: 27706605] [IF=1.8]
    17. JJ Nalluri, D Barh, V Azevedo, P Ghosh. [2016]. Towards a Comprehensive Understanding of miRNA Regulome and miRNA Interaction Networks. J Pharmacogenomics Pharmacoproteomics. 7 (160), 2153-0645.1000160 

    2015 

    1. Nalluri J, Rana P, Azevedo V, Barh D, Ghosh P. [2015]. Determining influential miRNA targets in diseases using influence diffusion model. BCB '15 Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, September 9 - 12, 2015, Atlanta, GA, ISBN: 978-1-4503-3853-0, Pages 519-520, doi>10.1145/2808719.2811440
    2. Barh D, Kamapantula B, Jain N, Nalluri J, Bhattacharya A, Juneja L, et al [2015]. miRegulome: a knowledge-base of miRNA regulomics and analysis. Nature, Scientific Reports, 5:12832, DOI: 10.1038/srep12832 [IF: 5.57]
    3. Mariano DCB, Pereira FL, Ghosh P, Barh D, Figueiredo HCP, Silva A, Ramos RTJ, Azevedo V. [2015]. MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes. Bioinformation 11(6): 276-279. [PMID: 26229287] [IF: 1.1]
    4. Nalluri JJ, Kamapantula BK, Barh D, Jain N, Bhattacharya A, de Almeida SS, Ramos RTJ, Silva A, Azevedo V, Ghosh P. [2015]. DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis. BMC Genomics. 16(Suppl 5):S12. DOI:10.1186/1471-2164-16-S5-S12 [IF=4.04]
    5. Radusky LG, Hassan SS, Lanzarotti E, Tiwari S, Jamal SB, Ali J, Ali A, Ferreira RS, Barh D, Silva A, Turjanski AG, Azevedo V. [2015]. An Integrated Structural Proteomics Approach Along The Druggable Genome of Corynebacterium Pseudotuberculosis Species For Putative Druggable Targets. BMC Genomics, DOI:10.1186/1471-2164-16-S5-S9  [IF=4.04]
    6. Guimarães LS, de Castro S, Trost E, Blom J, Ramos RTJ, Silva A, Barh D, Azevedo V. [2015]. Genome informatics and vaccine targets in Corynebacterium urealyticum using two whole genomes, comparative genomics, and reverse vaccinology. BMC Genomics. 16((Suppl 5):S7). DOI:10.1186/1471-2164-16-S5-S7 [IF=4.04]
    7. Kumavath RN, Ramana ChV, Sasikala Ch, Barh D, Kumar AP, Azevedo V. [2015]. Isolation and characterization of L-tryptophan ammonia lyase from Rubrivivax benzoatilyticus strain JA2. Curr Protein Pept Sci. DOI:10.2174/1389203716666150505235929 [PubMed: 25961404] [IF=2.33] 
    8. Foladora EL, de Oliveira AF, Jamala SB, Silva A, Ferreira SR, Barh D, Ghosh P, Azevedoa V. [2015]. In silico protein-protein interactions: avoiding data and method biases over sensitivity and specificity. Curr Protein Pept Sci. DOI:10.2174/1389203716666150505235437 [PubMed: 25961403] [IF=2.33]
    9. Talukder AK, Ravishankar S, Sasmal K, Gandham S, Prabhukumar J, Achutharao PH, Barh D, Blasi F. [2015]. XomAnnotate: Analysis of heterogeneous and complex exome- a step towards translational medicine. PLOS ONE; 10(4):e0123569. [PubMed: 25905921] [IF=4.04] 
    10. Ali A, Naz A, Soares SC, Bakhtiar M, Tiwari S, Hassan SS, Hanan F, Ramos R, Pereira U, Barh D, Figueiredo HC, Ussery DW, Miyoshi A, Silva A, Azevedo V. [2015]. Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets. Biomed Res Int.. 2015:139580 [PubMed: 25705648] [IF=2.7]  

     2014 

    1. SS Hassan, S Tiwari, LC Guimarães, SB Jamal, Barh D et al. [2014]. Proteome scale comparative modeling for conserved drug and vaccine targets identification in Corynebacterium pseudotuberculosis. BMC Genomics; 15(7):S3. [PubMed: 25573232]. [IF=4.04] 
    2. Devarapalli P, Kumavath RN, Barh D, Azevedo V. [2014]. The conserved mitochondrial gene distribution in relatives of Turritopsis nutricula, an immortal jellyfish. Bioinformation.10(9):586-91. [PMID: 25352727] [IF: 1.1]
    3. Tiwari S, da Costa MP, Almeida S, Hassan SS, Jamal SB, Oliveira A, Folador EL, Rocha F, de Abreu VA, Dorella F, Hirata R, de Oliveira DM, da Silva Teixeira MF, Silva A, Barh D, Azevedo V. [2014]. C. pseudotuberculosis Phop confers virulence and may be targeted by natural compounds.  Integr Biol (Camb). 6(11):1088-99. [PMID: 25212181]  [IF=4.45]   
    4. Folador EL, Hassan SS, Lemke N, Barh D, Silva A, Ferreira RS, Azevedo V. [2014]. An improved interolog mapping-based computational prediction of protein-protein interactions with increased network coverage. Integr Biol (Camb). 6(11):1080-7. [PMID: 25209055] [IF=4.45] 
    5. Kumavath R, Prasad S, Devarapalli P, Barh D. [2014]. In silico identification of novel candidate drug targets in Haemophilus influenzae Rd KW20. Int J of Genet and Genomics, 2(4): 62-67. doi: 10.11648/j.ijgg.20140204.13
    6. Bakhtiar SM, Ali A, Baig SM, Barh D, Miyoshi A, Azevedo V. [2014]. Identifying human disease genes: advances in molecular genetics and computational approaches. Genet Mol Res. 13(3):5073-87. [PMID: 25061732] [IF=1.18] 
    7. Blum K, Oscar-Berman M, Waite RL, Braverman ER, Kreuk F, Li M, Dushaj K, Madigan MA, Hauser M, Simpatico T, Barh D. [2014]. A Multi-Locus Approach to Treating Fibromyalgia by Boosting Dopaminergic Activity in the Meso-Limbic System of the Brain. J Genet Syndr Gene Ther. 5(1):213. [PMID: 24883230]
    8. K Blum, M Oscar-Berman, SH Blum, MA Madigan, RL Waite, M Thomas, Barh D. [2014]. Alcoholism & Drug Dependence. J Alcohol Drug Depend. 2:3. DOI: 0.4172/2329-6488.1000161
    9. Blum K, Oscar-Berman M, Demetrovics Z, Barh D, Gold MS. [2014]. Genetic Addiction Risk Score (GARS): Molecular Neurogenetic Evidence for Predisposition to Reward Deficiency Syndrome (RDS). Mol Neurobiol. 50(3):765-96. [PMID: 24878765] [IF=6.5] 
    10. Blum K, Oscar-Berman M, Downs W, Braverman ER, Kreuk F, Dushaj K, Truesdell C, Li M, Giordano J, Borsten J, Simpatico T, Barh D, Madigan MA, Jones S, Schoenthaler S. [2014]. Hypothesizing that Putative Dopaminergic, Melatonin, Benzodiazepine Reward Circuitry Receptor(s) Activator Provides Sleep Induction Benefits. Journal of Sleep Disorders & Therapy, 3(153). DOI:10.4172/2167-0277.1000153
    11. RL Waite, M Oscar-Berman, E RBraverman, Barh D, K Blum. [2014]. Quantitative Electroencephalography Analysis (qEEG) of Neuro-Electro-Adaptive Therapy 12™[NEAT12] Up-Regulates Cortical Potentials in an Alcoholic during Protracted Abstinence: Putative Anti-Craving Implications. J Addict Res Ther. 5:1. DIO: 0.4172/2155-6105.1000171
    12. K Blum, M Oscar-Berman, SH Blum, MA Madigan, RL Waite, M Thomas, Barh D. [2014]. Can Genetic Testing Coupled with Enhanced Dopaminergic Activation Reduce Recidivism Rates in the Workers Compensation Legacy Cases? J Alcohol Drug Depend. 2:3. DOI: 0.4172/2329-6488.1000161
    13. Jha UC, Chaturvedi SK, Bohra A, Basu PS, Khan MS, Barh D. [2014]. Abiotic stresses, constraints, and improvement strategies in chickpea. Plant Breeding, DOI: 10.1111/pbr.12150.  [IF=1.8]

    2013

    1. Blum K , Han D, Oscar-Berman M, Reinl G, DiNubile N, Madigan M, Bajaj A, Downs B, Giordano J, Westcott W, Smith L, Braverman E, Dushaj K, Hauser M, Simpatico T, McLaughlin T, Borsten J, Barh D. [2013]. Iatrogenic opioid dependence is endemic and legal: Genetic addiction risk score (GARS) with electrotherapy a paradigm shift in pain treatment programs. Health, 5, 16-34. doi: 10.4236/health.2013.511A1004
    2. Barh D, Jain N, Tiwari S, Field JK, Padin-Iruegas E, Ruibal A, López R, Herranz M, Bhattacharya A, Juneja L, Viero C, Silva A, Miyoshi A, Kumar A, Blum K, Azevedo V, Ghosh P, Liloglou T. [2013]. A novel in silico reverse-transcriptomics-based identification and blood-based validation of a panel of sub-type specific biomarkers in lung cancer. BMC Genomics, 14 (Suppl 6), S5 [PubMed: 24564251] [IF: 4.07]
    3. Nalluri J, Kamapantula B, Barh D, Ghosh P, Jain N, Juneja L, Barve N. [2013]. Determining miRNA-disease associations using Bipartite Graph Modelling. ACM 978-1-4503-2434-2/13/09. BCB ’13, September 22 - 25, 2013, Washington, DC
    4. Santos AR, Barbosa E, Fiaux K, Zurita-Turk M, Chaitankar V, Kamapantula B, Abdelzaher A, Ghosh P, Tiwari S, Barve N, Jain N, Barh D, Silva A, Miyoshi A, Azevedo V. [2013]. PANNOTATOR: an automated tool for annotation of pan-genomes. Genetics and molecular research 12(3):2982-2989 [PubMed: 24065654] [IF=1.18]
    5. Blum K, Thompson B, Oscar-Berman M, Giordano J, Braverman E, Femino J, Barh D, Downs W, Smpatico T, Schoenthaler S. [2013]. Genospirituality: Our Beliefs, Our Genomes, and Addictions. J Addict Res Ther. 5(4). pii: 162. [PubMed: 24971227] 
    6. Hill E, Han D, Dumouchel P, Dehak N, Quatieri T, Moehs C, Oscar-Berman M, Giordano J, Simpatico T, Barh D, Blum K. [2013]. Long term suboxone™ emotional reactivity as measured by automatic detection in speech. PLOS ONE. 9;8(7):e69043. [PubMed: 23874860] [IF=4.09]
    7. U.P. Pereira, S.C. Soares, J. Blom, C.A.G. Leal, R.T.J. Ramos, L.C. Guimarães, L.C. Oliveira, S.S. Almeida, S.S. Hassan, A.R. Santos, A. Miyoshi, A. Silva, A. Tauch, D. Barh, V. Azevedo, H.C.P. Figueiredo. [2013]. In silico prediction of conserved vaccine targets in Streptococcus agalactiae strains isolated from fish, cattle, and human samples. Genetics and Molecular Research 12(3):2902 – 2912 [PubMed: 24065646] [IF=1.18]
    8. Downs BW, Oscar-Berman M, Waite RL, Madigan MA, Giordano J, Beley T, Jones S, Simpatico T, Hauser M, Borsten J, Marcelo F, Braverman ER, Lohmann R, Dushaj K, Helman M, Barh D, Schoenthaler ST, Han D, Blum K. [2013]. Have We Hatched the Addiction Egg: Reward Deficiency Syndrome Solution System™. J Genet Syndr Gene Ther; 4: 136. [PMID: 24077767]
    9. Ramos RTJ, Carneiro AR, Caracciolo PH, Azevedo V, Schneider MPC, Barh D, Silva A. [2013]. Graphical Contig Analyzer for All Sequencing Platforms (G4ALL): a new stand-alone tool for finishing and draft generation of bacterial genomes. Bioinformation; 9(11):599-604. [PubMed: 23888102]  [IF=1.15]
    10. Silva WM, Seyffert N, Ciprandi A, Santos AV, Castro TLP, Pacheco LGC, Barh D, Loir YL, Pimenta AMC, Miyoshi A, Artur Silva A,  Azevedo V. [2013]. Differential Exoproteome Analysis of Two Corynebacterium pseudotuberculosis Biovar Ovis Strains Isolated from Sheep (1002) and Goat (C231). Curr Microbiol. [PMID: 23699973] [IF: 1.8]
    11. Kushner S, Han D, Oscar-Berman M, Downs WB, Madigan MA, Giordano J, Beley T, Jones S, Barh D, Simpatico T, Dushaj K, Lohmann R, Braverman ER, Schoenthaler S, Ellison D, Blum K. [2013]. Declinol, a Complex Containing Kudzu, Bitter Herbs (Gentian, Tangerine Peel) and Bupleurum, Significantly Reduced Alcohol Use Disorders Identification Test (AUDIT) Scores in Moderate to Heavy Drinkers: A Pilot Study. J Addict Res Ther, 4: 153. [PubMed: 24273684]
    12. Mclaughlin T, Oscar-Berman M, Simpatico T, Giordano J, Jones S, Barh D, Downs, Waite RL, Madigan M, Dushaj K, Lohmann R, Braverman ER, Han D,  Blum K. [2013]. Hypothesizing repetitive paraphilia behavior of a medication refractive Tourette’s syndrome patient having rapid clinical attenuation with KB220Z-nutrigenomic amino-acid therapy (NAAT). Journal of Behavioral Addictions, 2 (2): 117-124, DOI: 10.1556/JBA.2.2013.2.8
    13. Silva WM, Seyffert N, Santos AV, Castro TL, Pacheco LG, Santos AR, Ciprandi A, Dorella FA, Andrade HM, Barh D, Pimenta AM, Silva A, Miyoshi A, Azevedo V. [2013]. Identification of 11 new exoproteins in Corynebacterium pseudotuberculosis by comparative analysis of the exoproteome. Microb Pathog. [PMID: 23684727] [IF: 2.1]
    14. Blum K, Oscar-Berman M, Femino J, Waite RL, Benya L, Giordano J, Borsten J, Downs WB, Braverman ER, Loehmann R, Dushaj K, Han D, Simpatico T, Hauser M, Barh D, McLaughlin T. [2013]. Withdrawal from Buprenorphine/Naloxone and Maintenance with a Natural Dopaminergic Agonist: A Cautionary Note. J Addict Res Ther 4:  [PMID: 24273683]
    15. Ali A, Soares SC, Barbosa E, Santos AR, Barh D, Bakhtiar SM, Hassan SS, Ussery DW, Silva A, Miyoshi A, Azevedo V. [2013]. Microbial Comparative Genomics: An Overview of Tools and Insights Into The Genus Corynebacterium. J Bacteriol Parasitol 4: 167. doi:10.4172/2155-9597.1000167
    16. Campbell HB, Oscar-Berman M, Giordano J, Beley TG, Barh D, Downs BW, Blum K. [2013]. Common Phenotype in Patients with Both Food and Substance Dependence: Case Reports. J Genet Syndr Gene Ther 4: 122. [PubMed: 23543232] 
    17. Blum K, Oscar-Berman, Barh D, Giordano J, Gold MS. [2013]. Dopamine Genetics and Function in Food and Substance Abuse. J Genet Syndr Gene Ther 4: 121. [PubMed: 23543775] 
    18. Blum K, Oscar-Berman M, Dinubile N, Giordano J, Braverman ER, Truesdell CE, Barh D, Badgaiyan R. [2013].Coupling Genetic Addiction Risk Score (GARS) with Electrotherapy: Fighting Iatrogenic Opioid Dependence. J Addict Res Ther. 4(163):1000163. [PubMed: 24616834
    19. Blum K, Han D, Hauser M, Downs BW, Giordano J, Borsten J, Winchell E, Simpatico T, Madigan MA, Barh D. [2013]. Neurogenetic Impairments of Brain Reward Circuitry Links to Reward Deficiency Syndrome (RDS) as evidenced by Genetic Addiction Risk Score (GARS): A case study. The IIOAB Journal. 4 (1): 4-9.
    20. Barh D and Vedamurthy AB. [2013]. Therapeutic potential of Let-7, miR-125, miR-205, and miR-296 in breast cancer: An update. The IIOAB Journal. 4 (1): 25-26
    21. Barh D, Gupta K, Jain N, Khatri G, León-Sicairos N, Canizalez-Roman A, Tiwari S, Verma A, Rahangdale S, Shah Hassan S, Rodrigues Dos Santos A, Ali A, Carlos Guimarães L, Thiago Jucá Ramos R, Devarapalli P, Barve N, Bakhtiar M, Kumavath R, Ghosh P, Miyoshi A, Silva A, Kumar A, Narayan Misra A, Blum K, Baumbach J, Azevedo V. [2013]. Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by Piper betel compounds. Integrative Biology, 5: 495-509.  [PubMed: 23288366 ]  [IF: 4.5] 
    22. Blum K, Oscar-Berman M, Stuller E, Miller D, Giordano J, Morse S, McCormick L, Downs WB, Waite RL, Barh D, Neal D, Braverman ER, Lohmann R, Borsten J, Hauser M, Han D, Liu Y, Helman M, Simpatico T. [2013]. Neurogenetics and Nutrigenomics of Neuro-Nutrient Therapy for Reward Deficiency Syndrome (RDS): Clinical Ramifications as a Function of Molecular Neurobiological Mechanisms. J Addict Res Ther. 2012 Nov 27;3(5):139. [PubMed: 23926462] 
    23. Barh D, Barve N, Gupta K, Chandra S, Jain N, Tiwari S, Leon-Sicairos N, Canizalez-Roman A, Rodrigues Dos Santos A, Hassan SS, Almeida S, Thiago Jucá Ramos R, Augusto Carvalho de Abreu V, Ribeiro Carneiro A, de Castro Soares S, Luiz de Paula Castro T, Miyoshi A, Silva A, Kumar A, Narayan Misra A, Blum K, Braverman ER, Azevedo V. [2013]. Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds. PLOS ONE, 8(1): e52773. [PubMed: 23382822] [IF: 4.09

    2012

    1. Barh D, Jain N. A novel omics strategy to identify biomarkers for early diagnosis and classification of lung cancer. Journal of Thoracic Oncology, 2012,  7 (11), S5, Page No-S471 [IF: 3.66]  
    2. Miller M, Chen A, Stokes A, Silverman S, Bowirrat A, Manka M, Manka D, Miller D, Perrine K, Chen T, Bailey J, Downs BW, Waite R, Madigan M, Braverman E, Damle U, Kerner M, Giordano J, Morse S, Oscar-Berman M, Barh D, Blum K. [2012]. Early Intervention of Intravenous KB220IV- Neuroadaptagen Amino-Acid Therapy (NAAT)™ Improves Behavioral Outcomes in a Residential Addiction Treatment Program: A Pilot Study. Journal of Psychoactive Drugs. DOI:10.1080/02791072.2012.737727   [IF: 1.72]
    3. Hassan SS, Guimarães LC, Pereira Ude P, Islam A, Ali A, Bakhtiar SM, Ribeiro D, Rodrigues Dos Santos A, Soares Sde C, Dorella F, Pinto AC, Schneider MP, Barbosa MS, Almeida S, Abreu V, Aburjaile F, Carneiro AR, Cerdeira LT, Fiaux K, Barbosa E, Diniz C, Rocha FS, Ramos RT, Jain N, Tiwari S, Barh D, Miyoshi A, Müller B, Silva A, Azevedo V. [2012] Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology. Stand Genomic Sci. 7(2):189-99. [PubMed: 23408795] [IF: 3.6] 
    4. Barh D. [2012]. A normal 46 XX karyotype does not always represent female phenotype. The IIOAB Journal 3 (3), 49-50
    5. Barh D, Gupta K, Khatri G, Rahangdale S, Verma A. [2012]. An Integrative Omics Strategy for Identification of Skin Cancer Biomarkers. European Journal of Cancer, 48 (S6), 79. [IF: 5.53] 
    6. Santos AR, Carneiro A, Gala-García A, Pinto A, Barh D, Barbosa E, Aburjaile F, Dorella F, Rocha F, Guimarães L, Zurita-Turk M, Ramos R, Almeida S, Soares S, Pereira U, Abreu VC, Silva A, Miyoshi A, Azevedo V. [2012]. The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome. BMC Genomics; S5:S6. [Pubmed: 23095951] [IF: 4.07]
    7. Blum K, Giordano J, Borsten J, Downs BW, Hauser M, Simpatico T, Lohmann R, Braverman ER, Barh D. [2012]. Translational Research to Uncover Diagnostic & Therapeutic Gene Targets Emerging in a Genomic Era: from Bench to Bedside. J Genet Disor Dis Inf 2012, 1:1. doi.org/10.4172/jgddi.1000e103
    8. Ramos RTJ, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A. [2012]. Simplifier: a web tool to eliminate redundant NGS contigs. Bioinformation 8(20): 996-999. [PubMed: 23275695] [IF: 1.15]
    9. Blum K, Giordano J, Oscar-Berman M, Bowirrat A, Simpatico T, Barh D. [2012]. Diagnosis and Healing In Veterans Suspected of Suffering from Post-Traumatic Stress Disorder (PTSD) Using Reward Gene Testing and Reward Circuitry Natural Dopaminergic Activation. J Genet Syndr Gene Ther. 3(3):1000116. [PubMed: 23264885]
    10. Hassan SS, Schneider MP, Ramos RT, Carneiro AR, Ranieri A, Guimarães LC, Ali A, Bakhtiar SM, Pereira Ude P, Dos Santos AR, Soares Sde C, Dorella F, Pinto AC, Ribeiro D, Barbosa MS, Almeida S, Abreu V, Aburjaile F, Fiaux K, Barbosa E, Diniz C, Rocha FS, Saxena R, Tiwari S, Zambare V, Ghosh P, Pacheco LG, Dowson CG, Kumar A, Barh D, Miyoshi A, Azevedo V, Silva A. [2012]. Whole-Genome Sequence of Corynebacterium pseudotuberculosis Strain Cp162, Isolated from Camel. Journal of Bacteriology; 194(20):5718-19. [PubMed: 23012291] [IF: 3.92] 
    11. Hemaiswarya S, Raja R, Carvalho IS, Ravikumar R, Zambare V, Barh D. [2012].  An Indian scenario on renewable and sustainable energy sources with emphasis on algae. Appl Microbiol Biotechnol; 96(5):1125-35. [PubMed: 23070650] [IF: 3.42]
    12. Carneiro AR, Ramos RT, Barbosa1 HPM, Schneider MPC, Barh D, Azevedo V, Silva A. [2012]. Quality of prokaryote genomes assembly: Indispensable issues of factors affecting prokaryote genome assembly quality. Gene. 505(2):365-7 [PubMed: 22721771] [IF: 2.26]
    13. Zambare V. Zambare A, Barh D, Christopher LP. [2012]. Optimization of enzymatic hydrolysis of prairie cordgrass for improved ethanol production. J. Renewable Sustainable Energy 4, 033118 [IF: 1.14]
    14. Sá P, Pinto A, Ramos R, Coimbra N, Baraúna R, Azevedo V, Barh D, Silva A. [2012]. FunSys: Software for functional analysis of prokaryotic transcriptome and proteome. Bioinformation 8(11): 529-531.[PubMed: 22829724] [IF: 1.15]
    15. Blum K, Chen ALC, Giordano J, Borsten J, Chen TJH, Hauser M, Simpatico T, Femino J, Braverman ER, Barh D. [2012]. The Addictive Brain: All Roads Lead to Dopamine. Journal of Psychoactive Drugs, 44 (2), 134–143. [PubMed: 22880541] [IF: 1.72]
    16. Blum K, Oscar-Berman M, Bowirrat A, Giordano J, Madigan M, Braverman ER, Barh D, Hauser M, Borsten J, Simpatico T.. [2012]. Neuropsychiatric Genetics of Happiness, Friendships, and Politics: Hypothesizing Homophily (“Birds of a Feather Flock Together”) as a Function of Reward Gene Polymorphisms. J Genet Syndr Gene Ther 3:112. doi:10.4172/2157-7412.1000112 [PubMed: 23336089]
    17. Hollmann A, Saviello M, Delfederico L, Saraiva TDL, Barh D, Chandra S, Gupta K, Jain N, Zambare V, Kumar A, Misra AN, Christopher L, Azevedo V, Semorile L, Miyoshi A. [2012]. Tight controlled expression and secretion of Lactobacillus brevis SlpA in Lactococcus lactis. Biotechnology Letters; 34(7):1275-81.[PubMed: 22391736] [IF: 1.76]
    18. Chen ALC, Blum K, Chen TJH, Giordano J, Downs BW, Han D, Barh D, Braverman ER. [2012]. Correlation of the Taq1 Dopamine D2 Receptor Gene and Percent Body Fat in Obese and Screened Control Subjects: A Preliminary Report. Food & Function; 3(1):40-8. [PubMed: 22051885] [IF: 2.9]
    19. Barh D, Tiwari S, Bhat D. [2012]. Next-generation markers and targets in breast cancer: an integrative omics approach. Molecular Cancer Therapeutics. 10: (11), S1. [IF: 5.22]  

    2011

    1. Blum K, Chen ALC, Oscar-Berman M, Chen TJH, Lubar J, White N, Lubar J, Bowirrat A, Braverman E, Schoolfield J, Waite RL, Downs BW, Madigan M, Comings DE, Davis C, Kerner MM, Knopf J, Palomo T, Giordano JJ, Morse SA, Fornari F, Barh D, Femino J, Bailey JA.  [2011]. Generational Association Studies of Dopaminergic Genes in Reward Deficiency Syndrome (RDS) Subjects: Selecting Appropriate Phenotypes for Reward Dependence BehaviorsInt J Env Res Public Health; 8(12):4425-4459. [PubMed: 22408582[IF: 1.6]  
    2. Blum K, Bagchi D, Bowirrat A, Downs WB, Waite RL, Madigan M, Downs JM, Giordano J, Morse S, Braverman ER, Polanin M, Barh D, Fornari F, Simpatico T. [2011]. Nutrigenomics of Neuradaptogen Amino-Acid-Therapy and Neurometabolic Optimizers: Overcoming carbohydrate bingeing and overeating through neurometabolic mechanismsFunctional Foods in Health and Disease9:310-378.
    3. Morse S, Giordano J, Perrine K, Downs BW, Waite RL, Madigan M, Bailey J, Braverman ER,  Damle U, Knopf J, Simpatico T, Moeller MD, Barh D, Blum K. (2011). Audio Therapy Significantly Attenuates Aberrant Mood in Residential Patient Addiction Treatment: Putative Activation of Dopaminergic Pathways in the Meso-Limbic Reward Circuitry of Humans. J Addict Res Ther;  S3:001. doi:10.4172/2155-6105.S3- 001
    4. Cerdeira LT, Carneiro AR, Bol E, Barbosa MS, Coimbra N, Ramos RTJ, Almeida SS, Santos AR, Soares SC, Pinto AC, Ali A, Barbosa E, Dorella FA, Rocha FS, Guimaraes LG, Figueira F, Ghosh P, Zambare V, Barve N, Tiwari S, Barh D, Miyoshi A, Schneider MPC, Azevedo V, Silva A. [2011]. Complete Genome Sequence of Corynebacterium pseudotuberculosis strain - CIP 52.97- isolated from Horse in Kenya. Journal of Bacteriology, 193(24):7025-6. [PubMed: 22123771] [IF: 3.72]
    5. Blum K, Chen TJH, Bailey J, Bowirrat A, Femino J, Chen ALC, Madigan M, Simpatico T, Morse S, Giordano J, Damle U, Kerner M, Braverman ER, Fornari F, Downs BW, Rector C, Barh D, Berman MC. Can the chronic administration of the combination of buprenorphine and naloxone block dopaminergic activity causing anti-reward and relapse potentialMolecular Neurobiology, 44(3):250-68. [PubMed: 21948099[IF: 6.068]
    6. Blum K, Giordano J, Morse S, Anderson A, Carbaja J, Waite R, Downs B, Downs J, Madigan M, Barh D, Braverman E. [2011]. Hypothesizing Synergy between Acupuncture/ Auriculotherapy and Natural Activation of Mesolimbic Dopaminergic Pathways: Putative Natural Treatment Modalities for the Reduction of Drug Hunger and RelapseIIOAB LettersDOI: 10.5195/iioablett.2011.9
    7. Cerdeira LT, Pinto AC, Cruz Schneider MP, Silva S, Santos AR, Vieira Barbosa EG, Ali A, Barbosa MS, Carneiro AR, Jucá Ramos RT, Santos O, Barh D, Barve N, Zambare V, Estevão S, Guimarães LC, de Castro S, Dorella FA, Rocha FS, Augusto V, Tauch A, Trost E, Miyoshi A, Azevedo V, Silva A. [2011]. Whole genome sequence of Corynebacterium pseudotuberculosis PAT10 of strain isolated from sheep in Patagonia, ArgentineJournal of Bacteriology, 193(22):6420-1. [PubMed: 22038974] [IF: 3.72]
    8. Santos A, Ali A, Barbosa E, Silva A, Miyoshi A, Barh D, Azevedo V. [2011]. The reverse vaccinology- a contextual overviewThe IIOAB Journal; 2 (4): 8-15
    9. Barh D, Jain N, Tiwari S, Parida BP, D'Afonseca V, Li L, Ali A, Santos AR, Guimarães LC, de Castro Soares S, Miyoshi A, Bhattacharjee A, Misra AN, Silva A, Kumar A, Azevedo V. [2011]. A novel comparative genomics analysis for common drug and vaccine targets in Corynebacterium pseudotuberculosis and other CMN group of human pathogensChemical Biology & Drug Design; 78(1):73-84.  [PubMed: 21443692] [IF: 2.47] 
    10. Barh D, Tiwari S, Jain N, Ali A, Santos AR, Misra AN, Azevedo V, and Kumar A. [2011]. In silico subtractive genomics for target identification in human bacterial pathogensDrug Development Research; 72, 1-16[IF: 1.19]
    11. Barh D and Bhat D. [2011]. Integrative-omics based next-generation molecular markers and targets in colorectal cancerAnnals of Oncology, 21(Suppl 8):viii70[IF: 6.45]  

    2010

    1. Barh D, Bhat D, Viero C. [2010]. miReg: a resource for microRNA regulation. Journal of Integrative Bioinformatics; 7(1); 144. [PubMed: 20693604]
    2. Barh D, Misra AN, Kumar A, Vasco A. [2010]. A novel strategy of epitope design in Neisseria gonorrhoeae. Bioinformation; 5 (2), 77-85. [PubMed: 21346868] [IF: 1.15]
    3. Barh D, Sindhurani P, Bhattacharjee A. [2010]. NR2E1 inhibits cell proliferation in lung squamous cell carcinomas by regulating entry to cell cycle. Journal of Thoracic Oncology; 5 (5), S46: [IF: 4.54]    
    4. Barh D, Sindhurani P. [2010]. BLU is a classical tumor suppressor gene acts in DNA repair Pathway. Journal of Oncology Pharmacy Practice; 16(2), S34. [PubMed: 20351168]
    5. Barh D, Kumar A, Misra AN. [2010]. In silico identification of dual ability of N. gonorrhoeae ddl for developing drugs and vaccines against pathogenic Neisseria and other human pathogens. Journal of Proteomics & Bioinformatics; (3), 082-090. 
    6. Barh D, Malhotra R, Ravi B, Sindhurani P. [2010]. microRNA Let-7: an emerging next-generation cancer therapeutic. Current Oncology; 17 (1), 70-80. [PubMed: 20179807] [IF: 2.4]  
    7. Shanthi PA, Singh P, Barh D, Venkatachalaiah G. [2010]. Comparative karyology based systematics of Euphlyctis hexadactylus and Euphlyctis cyanophlyctis. International Journal of Integrative Biology; 9 (1), 6-9.

     2009

    1. Barh D and Misra AN. [2009]. Epitope Design from Transporter Targets in N. gonorrhoeae. Journal of Proteomics & Bioinformatics; 2, 475-480.
    2. Barh D, Kumar A, Chatterjee S, Liloglou T. [2009]. Molecular features, markers, drug targets, and targeted therapeutics in cardiac myxoma. Current Cancer Drug Targets; 9 (6), 705-716.  [PubMed: 19754355] [IF: 4.3]  
    3. Barh D, Misra AN. [2009]. In silico Identification of membrane associated candidate drug targets in Neisseria gonorrhoeae. International Journal of Integrative Biology; 6(2), 65-67.
    4. Barh. D. [2009]. Targeted therapy in unusual cancers with special reference to cardiac myxoma and male breast cancer. New Biotechnology; Vol. 25, S11[IF: 2.75]
    5. Barh D, Kumar A, Misra AN. [2009]. Genomic Target Database (GTD): A database of potential targets in human pathogenic bacteria. Bioinformation; 4 (1), 50-51. [PubMed: 20011153 [IF: 1.15] 
    6. Barh D and Kumar A. [2009]. In silico identification of candidate drug and vaccine targets from various pathways in Neisseria gonorrhoeae. In Silico Biol.; Vol. 9, 0019. [PubMed: 20109152] 
    7. Barh D, Parida S. [2009]. Cardiac myxoma: molecular markers, critical disease pathways, drug targets, and putative targeting miRs. Cancer Therapy; 7, 77-96.
    8. Barh D. [2009]. Biomarkers, critical disease pathways, drug targets, and alternative medicine in male breast cancer. Current Drug Targets; 10, 1-8. [PubMed: 19149530] [IF: 3.93]  

     2008

    1. Barh D and Das. K. [2008]. Targeting critical disease pathways in male breast cancer: a pharmacogenomics approach. Cancer Therapy, 6: 193-212.
    2. Barh D. [2008]. Let-7 replacement therapy: applicability in cancer. Cancer Therapy; 6, 939-984.
    3. Barh D, Parida S. Parida BP, Viswanathan G. [2008]. Let-7, miR-125, miR-205, and miR-296 are prospective therapeutic agents in breast cancer molecular medicine. Gene Therapy and Molecular Biology; 12, 189-206.  [IF: 1.1]
    4. Barh D and Viswanathan G. [2008]. Syzigium Cumini Inhibits Growth and Induces Apoptosis in Cervical Cancer Cell Lines: A Primary Study. ecancermedicalscience, 2: 83 DOI: 10.3332/eCMS.2008.83  [IF: 1.2] 
    5. Barh D, Srivastava HC, and Mazumdar, BC. [2008]. Self Fruit Extract and Vitamin-C Improves Tomato Seed Germination. Journal of Applied Sciences Research, 4(2): 156-165.
    6. Barh D. [2008]. Dietary Phytochemicals: a Promise to Chemoprevention. Advanced Biotech, 21-23
    7. Barh D, Mazumdar BC. [2008]. Comparative nutritive values of palm saps before and after their partial fermentation and effective use of wild date (Phoenix sylvestris Roxb.) sap in treatment of anemia. Research Journal of Medicine and Medical Sciences, 3 (2), 173-176.

     

     Research reference books

    1.  Barh D, Azevedo V (Edt): Omics Technologies and Bio-Engineering: Towards Improving Quality of Life. ISBN: 9780128046593, First Ed: 2017; Elsevier USA. (In Press)
    2. Barh D (Edt): Precision Medicine: Prediction, Prevention with Personalization. ISBN: 978-1498775601, First Ed: 2017; Taylor & Francis LLC, USA. (In Press)
    3. Verma M, Barh D (Edt): Progress and Challenges in Precision Medicine. ISBN: 9780128094112, First Ed: Jan 2017;  Elsevier USA, USA
    4. Khan MS, Khan IA, Barh D (Edt): Applied Molecular Biotechnology: The Next Generation of Genetic Engineering. ISBN: 9781498714815, 2016; Taylor & Francis LLC, USA
    5. Barh D, Khan MS, Davies E. (Edt): PlantOmics: the omics of plant science. ISBN: 9788132221722; First Ed: 2015; Springer LLC.
    6. Barh D, Gunduz M (Edts): Noninvasive Molecular Markers in Gynecologic Cancers.  ISBN: 9781466569386, First Ed:  2015; Taylor & Francis LLC, USA
    7. Barh D (Edt): Omics approaches in breast cancer: towards next-generation diagnosis, prognosis, and therapy. ISBN: 9788132208426; First Ed: 2014; Springer LLC  
    8. Barh D, Carpi A, Verma, M, and Gunduz M (Edts): Cancer Biomarkers: Non-Invasive Early Diagnosis and Prognosis. ISBN: 9781466584280; First Ed: 2014; Taylor & Francis LLC, USA 
    9. Barh D (Edts): OMICS Applications in Crop Science. ISBN: 9781466562813; First Ed: Dec, 2013. Taylor & Francis LLC, USA  
    10. Barh D, Dhwan D and Ganguly NK (Edts): Omics for Personalized Medicine. ISBN: 978-8132211839, First Ed: 2013; Springer LLC,  
    11. Barh D, Blum K, and Madigan MA (Edts): OMICS: Biomedical Perspectives and Applications ISBN: 9781439850084; First Ed: 2011, CRC Press, USA.
    12. Singh K, Vig AP, and Barh DVERMICOMPOSTING: a boon for soil, plant, and environment.  ISBN: 9783844334425; 2011; LAP Lambert Academic Publishing, Germany.
    13. Barh D, Das K, and Srivastava HC: Male Breast Cancer: Identifying and targeting critical disease signaling pathways towards development of personalized phytotherapy. ISBN: 9783843367592; First Ed: 2010; LAP Lambert Academic Publishing, Germany.
    14. Srivastava HC, Barh DGenetics: Fundamentals and Applications. ISBN: 8181892631; First Ed: 2008; International Book Distributing Company, INDIA.

     

    Book Chapters

    1. Gomes de Sá PHC, Guimarães LC, das Graças DA, de Oliveira Veras AA, Barh D, Azevedo V, Silva A, Ramos RTJ. NGS and data-analysis: strategies, tools, pipelines and protocols. In “Omics Technologies and Bio-engineering: Towards Improving Quality of Life”. Edt by Barh D, Azevedo V, ISBN: 9780128046593, Elsevier USA (In press)
    2. de Oliveira Veras AA,  Gomes de Sá PHC,  Pinheiro KC, Barh D, Azevedo V, Ramos RTJ, Silva A. Computational techniques in data integration and big-data handling in omics. In “Omics Technologies and Bio-engineering: Towards Improving Quality of Life”. Edt by Barh D, Azevedo V, ISBN: 9780128046593, Elsevier USA (In press)
    3. Nalluri JJ, Barh D, Azevedo V, Ghosh P. [2017]. Bioinformatics and systems biology in bio-engineering. In “Omics Technologies and Bio-engineering: Towards Improving Quality of Life”. Edt by Barh D, Azevedo V, ISBN: 9780128046593, Elsevier USA (In press)
    4. de Sousa CS, Hassan SS, Pinto AC, Silva WM, de Almeida SS, de Castro SS, Barh D, Azevedo V. [2017] Omics approaches in microbial biotechnology: medical, agricultural, industrial and environmental applications. In “Omics Technologies and Bio-engineering: Towards Improving Quality of Life”. Edt by Barh D, Azevedo V, ISBN: 9780128046593, Elsevier USA (In press)
    5. de Sousa CS, Corrêa Mendonça MA, Hassan SS, Azevedo VA, Barh D. [2016]. Biotechnology for improved crop productivity and quality. In “Applied Molecular Biotechnology: The Next Generation of Genetic Engineering”. Edt by Khan MS, Khan IA, Barh D, ISBN: 9781498714815, pp. 231-248, Taylor & Francis LLC, USA
    6. Jha UC, Barh D. [2016]. Whole genome resequencing: Current status and future prospect in crop improvement. [2016] In “Applied Molecular Biotechnology: The Next Generation of Genetic Engineering”. Edt by Khan MS, Khan IA, Barh D, ISBN: 9781498714815, pp. 187–211, Taylor & Francis LLC, USA
    7. Jha UC, Bhat JS, Patil BS, Hossain F, Barh D. [2015]. Functional Genomics: Applications in Plant Science. in "PlantOmics: The Omics of Plant Science", ISBN: 9788132221722; Edt by Barh D, Khan MS, Davies E;  pp. 65-111, Springer, LLC
    8. Barh D. Davies E. [2015]. Plantomics and Futuromics. in "PlantOmics: The Omics of Plant Science", ISBN: 9788132221722; Edt by Barh D, Khan MS, Davies E; pp. 821-825, Springer, LLC
    9. Verma M, Barh D, Hassan SS, Azevedo V. [2015].  Next-generation Molecular Markers: Challenges, Applications, and Future Perspectives. In 'Molecular Biology and Biotechnology", 6th Ed, ISBN: 9781849737951, Edt by Rapley R, Whitehouse D, pp. 420-453, Royal Society of Chemistry, UK
    10. Verma M, Barh D, Tiwari S, Azevedo V. [2015]. Molecular Biomarkers: Overview, Technologies, and Strategies. In 'Molecular Biology and Biotechnology", 6th Ed, ISBN: 9781849737951, Edt by Rapley R, Whitehouse D, pp. 369-419, Royal Society of Chemistry, UK
    11. Bakhtiar SM, Ali A, Barh D. [2015]. Epigenetics in Head and Neck Cancer. [2015]. In “Cancer Epigenetics: Methods Mol Biol” ISBN: 9781493918034, Edt. Verma M, pp.751-769;  Humana Press, Springer USA [PubMed: 25421690]
    12. Oznur M, Dede S, Barh D, Gunduz M. [2015]. Cytogenetic Early Markers in Gynecologic Cancers. In "Noninvasive Molecular Markers in Gynecologic Cancers", ISBN: 9781466569386, Edt. Barh & Gunduz, pp. 43-60. Taylor & Francis, USA
    13. Yilmaz B, Moroski-Erkul CA, Hatipoglu OF, Gunduz E, Barh D, Gunduz M. [2015]. Biomarkers for Early Detection of Familial Breast Cancer. "Noninvasive Molecular Markers in Gynecologic Cancers", ISBN: 9781466569386, Edt. by Barh & Gunduz, pp. 168-181. Taylor & Francis, USA
    14. E Demir, B Atar, D Dhawan, Barh D, M Gunduz, E Gunduz. [2014]. Breast Cancer Stem Cells and Cellomics. In "Omics Approaches in Breast Cancer: Towards Next-Generation Diagnosis, Prognosis and Therapy ", ISBN: 9788132234722, Edt. by Barh D, pp. 245-263, Springer, LLC, Germany. DOI: 10.1007/978-81-322-0843-3_12
    15. ZN Unal, G Kaya, Barh D, E Gunduz, M Gunduz. [2014]. Omics of Male Breast Cancer. In "Omics Approaches in Breast Cancer: Towards Next-Generation Diagnosis, Prognosis and Therapy ", ISBN: 9788132234722, Edt. by Barh D, pp. 245-263, Springer, LLC, Germany. pp. 265-276, Springer, LLC. DOI: 10.1007/978-81-322-0843-3_13
    16. Verma M, Barh D. [2014]. Breast Cancer Biomarkers for Risk Assessment, Screening, Detection, Diagnosis, and Prognosis. In "Omics Approaches in Breast Cancer: Towards Next-Generation Diagnosis, Prognosis and Therapy ", ISBN: 9788132234722, Edt. by Barh D, pp. 245-263, Springer, LLC, Germany. pp. 393-407, Springer, LLC. DOI: 10.1007/978-81-322-0843-3_20
    17. EC Yiannakopoulou, Barh D. [2014]. Pharmacogenomics–Pharmacoepigenomics of Breast Cancer Therapy: Clinical Implications. In "Omics Approaches in Breast Cancer: Towards Next-Generation Diagnosis, Prognosis and Therapy ", ISBN: 9788132234722, Edt. by Barh D, pp. 245-263, Springer, LLC, Germany. pp. 499-518, Springer, LLC. DOI: 10.1007/978-81-322-0843-3_25
    18. M Verma, Barh D, N Jain. [2014]. Noninvasive Early Markers in Lung Cancer. In "Cancer Biomarkers: Minimal and Noninvasive Early Diagnosis and Prognosis", Edt by Barh et al. ISBN: 9781466584280, pp. 415-431. Taylor & Francis LLC, USA, DOI: 10.1201/b16389-23
    19. Bohra A, Jha UC, Singh B, Soren KR, Singh IP, Chaturvedi SK, Nadarajan N, and Barh D: [2014]. Omics Approaches in Pulses. In “OMICS Applications in Crop Science” ISBN 9781466585256, Edt by Barh D. pp. 101–138, Taylor & Francis LLC, USA .
    20. Blum K, Han D, Giordano J, Lohmann R,  Braverman ER, Madigan MA,  Barh D, Femino J, Hauser M, Downs BW, Simpatico T: [2013]. Neurogenetics and Nutrigenomics of Reward Deficiency Syndrome (RDS): Stratification of Addiction Risk and Mesolimbic Nutrigenomic Manipulation of Hypodopaminergic Function. In “Omics for Personalized Medicine” ISBN: 9788132211839, Edt by Barh D, et al. pp.365-398, Springer, LLC, Germany
    21. Barh D, Yiannakopoulou UC, SALAWU UO, Chowbina S, Chaitankar V, Ghosh P, Azevedo V: [2013]. In Silico Models: From Simple Networks to Complex Diseases. In “Animal Biotechnology: Models in Discovery and Translation”, ISBN: 9780124160026, Edt by Verma and Singh. Pp. 385-405, Elsevier, USA
    22. Chaitankar V, Barh D, Zambare V, Azevedo V, Ghosh P: [2013].  Computational Regulomics: Information Theoretic Approaches Towards Regulatory Network Inference. In “OMICS: Applications in Biomedical, Agricultural, and Environmental Sciences” ISBN 9781466562813. Edt by Barh D, Zambare V, Azevedo V. pp. 225–244, Taylor & Francis LLC, USA .
    23. Silva A, Abreua VD, Barh D, Miyoshi A, Azevedo V: [2013]. Next Generation Sequencing and Assembly of Bacterial Genomes. In “OMICS: Applications in Biomedical, Agricultural, and Environmental Sciences” ISBN 9781466562813. Edt by Barh D, et al. pp.367–383, Taylor & Francis LLC, USA
    24. Barh D, Agte V, Dhawan D, Agte V, and Padh H: [2012]. Cancer Biomarkers for Diagnosis, Prognosis, and Therapy. In “Molecular and Cellular Therapeutics”. ISBN: 9780470748145. Edt by David Whitehouse and Ralph Rapley. pp. 18-68, doi: 10.1002/9781119967309.ch2, John Wiley & Sons Ltd, UK.
    25. Barh D, Ahmad S, and Bhattacharjee A: [2012]. In silico and ultra-high throughput screenings (uHTS) in drug discovery: an overview. In “Pharmaceutical Biotechnology (2nd Ed)”. ISBN: 9783527329946. Edt by Oliver Kayser and Herbert Warzecha. pp.451-490, Doi: 10.1002/9783527632909.ch18, Wiley-VCH Verlag GmbH & Co, Germany.
    26. López-Corrales NL, Miyoshi A, Azevedo V, Stuztman T, and Barh D: [2011]. Omics Approaches in Toxicology Research and Biomedical Applications. In “OMICS: Biomedical Perspectives and Applications”. ISBN: 9781439850084. Edt by Barh D, et al. pp.53–76, Taylor & Francis LLC, USA.
    27. Barh D, Margaret AM, and Blum K: [2011]. Future Omics Perspective: Paving a Path to Optimization of Health. In “OMICS: Biomedical Perspectives and Applications”. ISBN: 9781439850084. Edt by Barh D, Median M, Blum K. pp.567–576, Taylor & Francis LLC, USA.

     

     International conferences and meetings

    1. Barh D, Jain N. A novel omics strategy to identify biomarkers for early diagnosis and classification of lung cancer (P1-054). 5th  Asia Pacific Lung Cancer Conference and 3rd International Thymic Malignancy Interest Group Annual Meeting, November 25 – 28, 2012, Fukuoka, Japan (best Poster Award)
    2. Barh D, Gupta K, Khatri G, Rahangdale S, Verma A: An Integrative Omics Strategy for Identification of Skin Cancer Biomarkers (P258). 24th EORTC-NCI-AACR Symposium on Molecular Targets and Cancer Therapeutics; Nov 06-09, 2012; Dublin; Ireland
    3. Barh D, Tiwari S, Bhat D: Next-generation markers and targets in breast cancer: an integrative omics approach (B22). American Association for Cancer Research - National Cancer Institute - European Organization for Research and Treatment of Cancer (AACR-NCI- EORTC)-International Conference: Molecular Targets and Cancer Therapeutics: Nov 12-16, 2011; San Francisco, CA, USA
    4. Barh D and Bhat D: Integrative-omics based next-generation molecular markers and targets in colorectal cancer (P185).  35th ESMO Congress 8-12 October, 2010, Milan, Italy
    5. Barh D, Sindhurani P: BLU is a classical tumor suppressor gene acts in DNA repair Pathway. XII Symposium of the International Society of Oncology Pharmacy Practitioners. May 5-8, 2010. Prague, Czech Republic
    6. Barh D, Sindhurani P, Bhattacharjee A: NR2E1 inhibits cell proliferation in lung squamous cell carcinomas by regulating entry to cell cycle. (P111). 2nd European Lung Cancer Conference, 28 April – 1 May, 2010, Geneva, Switzerland 
    7. Barh D and Bhat D: Integrative omics based molecular insights, markers, and drug targets in lung cancer. (P12). International Society for Cellular Oncology (ISCO-2010 Congress), 17-19 March, 2010. Dresden, Germany 
    8. Barh D: Targeted therapy in unusual cancers with special reference to cardiac myxoma and male breast cancer. 14th European Congress on Biotechnology, 13–16 September, 2009. Barcelona, Spain   

     

     

     

     More coming soon...........................